Periodic misunderstandings and mutual bitterness in the relations between co-operating intelligence agencies are part of the game of intelligence.
The CIA's penetration of the Chennai office of the Research & Analysis Wing in the 1980s to collect intelligence about India's role in Sri Lanka, its penetration of the Intelligence Bureau in the 1990s to collect intelligence about its counter-intelligence set-up, its post-2001 penetration of the R&AW through Maj Rabinder Singh, who was helped by the CIA to flee to the US to avoid being arrested and interrogated by the Indian counter-intelligence, and its post-2004 penetration of the National Security Council Secretariat (NSCS) through the mechanism of the Indo-US Cyber Security Forum created feelings of bad blood and bitterness in the relations between the intelligence communities of the two countries, but this did not last long. The intelligence communities of the two countries realised the importance of not allowing such instances of perceived betrayal of confidence to affect their long-term relationship, which has served the two countries well in the past and which would be necessary in the future if they have to strengthen their strategic relationship.
A permanent itch for penetration is ingrained in an intelligence professional. He or she keeps looking out all the time for opportunities for penetration. It is immaterial whether the set-up to be penetrated is that of a friend or a foe. The important question is whether the penetration would produce valuable intelligence and whether the resulting intelligence is of such value as to warrant risk-taking to the extent of temporary misunderstandings with the country whose set-up is penetrated.
Past instances of misunderstandings and unhappiness in counter-terrorism co-operation between the intelligence communities of India and the US date from the days of Khalistani terrorism in Punjab, the Mumbai blasts of March,1993 and the outbreak of Pakistan-sponsored terrorism in Jammu & Kashmir in 1989. The Indian intelligence community always felt and continues to feel that in matters relating to the complicity of the State of Pakistan in acts of terrorism in India, the co-operation of the US intelligence left much to be desired. This position shows no signs of changing even after the 26/11 terrorist strikes in Mumbai in which for the first time Pakistan-sponsored terrorists killed not only 141 Indian nationals, but also 25 foreigners--six of them US nationals and six others Jewish either with Israeli nationality or with dual Israeli-US nationality.
Despite this, there has been a qualitative change in the Indo-US co-operation in counter-terrorism since 9/11. This change has been particularly noticeable in four matters: